The present 3D Dataset contains the 3D models of extant Chiropteran endocranial casts, documenting 16 of the 19 extant bat families. They are used by Maugoust & Orliac (2023) to assess the correspondences between the brain and brain-surrounding tissues (i.e., neural tissues, blood vessels, meninges) and their imprint on the braincase, allowing for eventually proposing a Chiroptera-scale nomenclature of the endocast.