3D models related to the publication: Hide and seek shark teeth in Random Forests: Machine learning applied to Scyliorhinus canicula

Berio, Fidji; Bayle, Yann; Agret, Sylvie; Baum, Daniel; Goudemand, Nicolas; Debiais-Thibaud, Mélanie

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2022-06
Volume 08, issue 02
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ISSN: 2274-0422

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MorphoMuseuM Volume 08, issue 02
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3D dataset

3D models related to the publication: Hide and seek shark teeth in Random Forests: Machine learning applied to Scyliorhinus canicula

Fidji Berio , Yann Bayle , Sylvie Agret, Daniel Baum , Nicolas Goudemand and Mélanie Debiais-Thibaud

Published online: 24/05/2022

Keywords: geometric morphometrics; machine learning; Scyliorhinus canicula; sharks; tooth morphology

https://doi.org/10.18563/journal.m3.164

References: 18
Cited by: 1

Cite this article: Fidji Berio, Yann Bayle, Sylvie Agret, Daniel Baum, Nicolas Goudemand and Mélanie Debiais-Thibaud, 2022. 3D models related to the publication: Hide and seek shark teeth in Random Forests: Machine learning applied to Scyliorhinus canicula. MorphoMuseuM 8:164. doi: 10.18563/journal.m3.164

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Abstract

The present dataset contains the 3D models analyzed in Berio, F., Bayle, Y., Baum, D., Goudemand, N., and Debiais-Thibaud, M. 2022. Hide and seek shark teeth in Random Forests: Machine learning applied to Scyliorhinus canicula. It contains the head surfaces of 56 North Atlantic and Mediterranean small-spotted catsharks Scyliorhinus canicula, from which tooth surfaces were further extracted to perform geometric morphometrics and machine learning.

Specimens and 3D Data

Scyliorhinus canicula 081118A View specimen

M3#941

Head of a 10.6 cm long Scyliorhinus canicula female from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.941 state:published

Download 3D surface file

Scyliorhinus canicula 081118B View specimen

M3#942

Head of a 11.0 cm long Scyliorhinus canicula female from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.942 state:published

Download 3D surface file

Scyliorhinus canicula 200118I View specimen

M3#959

Head of a 45.0 cm long Scyliorhinus canicula female from a Mediterranean population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.959 state:published

Download 3D surface file

Scyliorhinus canicula 200118H View specimen

M3#958

Head of a 47.0 cm long Scyliorhinus canicula female from a Mediterranean population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.958 state:published

Download 3D surface file

Scyliorhinus canicula 200118G View specimen

M3#957

Head of a 40.0 cm long Scyliorhinus canicula female from a Mediterranean population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.957 state:published

Download 3D surface file

Scyliorhinus canicula 081118C View specimen

M3#940

Head of a 11.2 cm long Scyliorhinus canicula female from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.940 state:published

Download 3D surface file

Scyliorhinus canicula 081118D View specimen

M3#939

Head of a 10.2 cm long Scyliorhinus canicula female from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.939 state:published

Download 3D surface file

Scyliorhinus canicula 081118E View specimen

M3#938

Head of a 12.0 cm long Scyliorhinus canicula male from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.938 state:published

Download 3D surface file

Scyliorhinus canicula 081118F View specimen

M3#937

Head of a 10.7 cm long Scyliorhinus canicula male from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.937 state:published

Download 3D surface file

Scyliorhinus canicula 081118G View specimen

M3#936

Head of a 10.8 cm long Scyliorhinus canicula male from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.936 state:published

Download 3D surface file

Scyliorhinus canicula 200118F View specimen

M3#935

Head of a 41.5 cm long Scyliorhinus canicula female from a Mediterranean population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.935 state:published

Download 3D surface file

Scyliorhinus canicula 200118E View specimen

M3#934

Head of a 40.0 cm long Scyliorhinus canicula female from a Mediterranean population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.934 state:published

Download 3D surface file

Scyliorhinus canicula 200118D View specimen

M3#933

Head of a 42.0 cm long Scyliorhinus canicula male from a Mediterranean population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.933 state:published

Download 3D surface file

Scyliorhinus canicula 200118C View specimen

M3#943

Head of a 41.0 cm long Scyliorhinus canicula male from a Mediterranean population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.943 state:published

Download 3D surface file

Scyliorhinus canicula 200118B View specimen

M3#945

Head of a 44.0 cm long Scyliorhinus canicula male from a Mediterranean population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.945 state:published

Download 3D surface file

Scyliorhinus canicula 200118A View specimen

M3#944

Head of a 46.0 cm long Scyliorhinus canicula male from a Mediterranean population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.944 state:published

Download 3D surface file

Scyliorhinus canicula 030418A View specimen

M3#956

Head of a 13.9 cm long Scyliorhinus canicula female from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.956 state:published

Download 3D surface file

Scyliorhinus canicula 030418B View specimen

M3#955

Head of a 13.6 cm long Scyliorhinus canicula female from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.955 state:published

Download 3D surface file

Scyliorhinus canicula 030418C View specimen

M3#954

Head of a 13.4 cm long Scyliorhinus canicula male from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.954 state:published

Download 3D surface file

Scyliorhinus canicula 030418D View specimen

M3#953

Head of a 13.2 cm long Scyliorhinus canicula male from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.953 state:published

Download 3D surface file

Scyliorhinus canicula 071118A View specimen

M3#952

Head of a 36.0 cm long Scyliorhinus canicula female from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.952 state:published

Download 3D surface file

Scyliorhinus canicula 071118B View specimen

M3#951

Head of a 33.0 cm long Scyliorhinus canicula female from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.951 state:published

Download 3D surface file

Scyliorhinus canicula 071118C View specimen

M3#950

Head of a 32.0 cm long Scyliorhinus canicula female from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.950 state:published

Download 3D surface file

Scyliorhinus canicula 071118D View specimen

M3#949

Head of a 35.0 cm long Scyliorhinus canicula male from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.949 state:published

Download 3D surface file

Scyliorhinus canicula 071118E View specimen

M3#948

Head of a 35.0 cm long Scyliorhinus canicula male from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.948 state:published

Download 3D surface file

Scyliorhinus canicula 071118F View specimen

M3#947

Head of a 33.0 cm long Scyliorhinus canicula male from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.947 state:published

Download 3D surface file

Scyliorhinus canicula 121118G View specimen

M3#946

Head of a 36.0 cm long Scyliorhinus canicula female from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.946 state:published

Download 3D surface file

Scyliorhinus canicula 121118H View specimen

M3#932

Head of a 35.0 cm long Scyliorhinus canicula female from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.932 state:published

Download 3D surface file

Scyliorhinus canicula 121118I View specimen

M3#931

Head of a 33.0 cm long Scyliorhinus canicula male from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.931 state:published

Download 3D surface file

Scyliorhinus canicula 121118J View specimen

M3#917

Head of a 36.0 cm long Scyliorhinus canicula male from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.917 state:published

Download 3D surface file

Scyliorhinus canicula 180118A View specimen

M3#916

Head of a 57.0 cm long Scyliorhinus canicula female from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.916 state:published

Download 3D surface file

Scyliorhinus canicula 180118B View specimen

M3#915

Head of a 58.0 cm long Scyliorhinus canicula female from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.915 state:published

Download 3D surface file

Scyliorhinus canicula 180118C View specimen

M3#911

Head of a 58.5 cm long Scyliorhinus canicula female from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.911 state:published

Download 3D surface file

Scyliorhinus canicula 180118D View specimen

M3#914

Head of a 56.0 cm long Scyliorhinus canicula male from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.914 state:published

Download 3D surface file

Scyliorhinus canicula 180118E View specimen

M3#913

Head of a 58.0 cm long Scyliorhinus canicula male from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.913 state:published

Download 3D surface file

Scyliorhinus canicula 180118F View specimen

M3#912

Head of a 59.0 cm long Scyliorhinus canicula male from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.912 state:published

Download 3D surface file

Scyliorhinus canicula 270918A View specimen

M3#910

Head of a 56.0 cm long Scyliorhinus canicula male from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.910 state:published

Download 3D surface file

Scyliorhinus canicula 270918B View specimen

M3#908

Head of a 59.5 cm long Scyliorhinus canicula male from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.908 state:published

Download 3D surface file

Scyliorhinus canicula 270918C View specimen

M3#909

Head of a 63.0 cm long Scyliorhinus canicula female from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.909 state:published

Download 3D surface file

Scyliorhinus canicula 270918D View specimen

M3#907

Head of a 64.0 cm long Scyliorhinus canicula female from a North Atlantic population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.907 state:published

Download 3D surface file

Scyliorhinus canicula 12111931 View specimen

M3#905

Head of a 9.5 cm long Scyliorhinus canicula male from a Mediterranean population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.905 state:published

Download 3D surface file

Scyliorhinus canicula 12111933 View specimen

M3#906

Head of a 9.5 cm long Scyliorhinus canicula female from a Mediterranean population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.906 state:published

Download 3D surface file

Scyliorhinus canicula 190118A View specimen

M3#918

Head of a 8.8 cm long Scyliorhinus canicula female from a Mediterranean population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.918 state:published

Download 3D surface file

Scyliorhinus canicula 190118C View specimen

M3#930

Head of a 9.0 cm long Scyliorhinus canicula female from a Mediterranean population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.930 state:published

Download 3D surface file

Scyliorhinus canicula 190118D View specimen

M3#929

Head of a 8.9 cm long Scyliorhinus canicula male from a Mediterranean population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.929 state:published

Download 3D surface file

Scyliorhinus canicula 190118F View specimen

M3#928

Head of a 9.1 cm long Scyliorhinus canicula male from a Mediterranean population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.928 state:published

Download 3D surface file

Scyliorhinus canicula 060718A View specimen

M3#927

Head of a 25.5 cm long Scyliorhinus canicula male from a Mediterranean population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.927 state:published

Download 3D surface file

Scyliorhinus canicula 060718B View specimen

M3#926

Head of a 23.0 cm long Scyliorhinus canicula female from a Mediterranean population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.926 state:published

Download 3D surface file

Scyliorhinus canicula 060718C View specimen

M3#925

Head of a 28.0 cm long Scyliorhinus canicula male from a Mediterranean population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.925 state:published

Download 3D surface file

Scyliorhinus canicula 060718D View specimen

M3#924

Head of a 21.0 cm long Scyliorhinus canicula male from a Mediterranean population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.924 state:published

Download 3D surface file

Scyliorhinus canicula 060718E View specimen

M3#923

Head of a 23.5 cm long Scyliorhinus canicula male from a Mediterranean population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.923 state:published

Download 3D surface file

Scyliorhinus canicula 060718F View specimen

M3#922

Head of a 22.5 cm long Scyliorhinus canicula female from a Mediterranean population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.922 state:published

Download 3D surface file

Scyliorhinus canicula 121218A View specimen

M3#921

Head of a 31.0 cm long Scyliorhinus canicula female from a Mediterranean population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.921 state:published

Download 3D surface file

Scyliorhinus canicula 121218B View specimen

M3#920

Head of a 31.0 cm long Scyliorhinus canicula female from a Mediterranean population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.920 state:published

Download 3D surface file

Scyliorhinus canicula 121218C View specimen

M3#919

Head of a 31.0 cm long Scyliorhinus canicula female from a Mediterranean population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.919 state:published

Download 3D surface file

Scyliorhinus canicula 121218D View specimen

M3#904

Head of a 31.0 cm long Scyliorhinus canicula male from a Mediterranean population.

Type: "3D_surfaces"

doi: 10.18563/m3.sf.904 state:published

Download 3D surface file

See original publication

Published in Volume 08, issue 02 (2022)

References

Archer, K. J. and Kimes, R. V., 2008. ‘Empirical characterization of random forest variable importance measures’, Computational Statistics and Data Analysis. North-Holland, 52(4), 2249–2260. https://doi.org/10.1016/j.csda.2007.08.015

Barbieri, M. et al., 2014. ‘Molecular contribution to stock identification in the small-spotted catshark, Scyliorhinus canicula (Chondrichthyes, Scyliorhinidae)’, Fisheries Research, 154, 11–16. https://doi.org/10.1016/J.FISHRES.2014.01.021

Barone, M. et al., 2021. ‘Performance of iSharkFin in the identification of wet dorsal fins from priority shark species’, Ecological Informatics, 101514. https://doi.org/10.1016/j.ecoinf.2021.101514

Berio, F. and Bayle, Y., 2020. ‘Scyland3D: Processing 3D landmarks’, Journal of Open Source Software, 5(46), 1262. https://doi.org/10.21105/joss.01262

Berio, F. et al., 2020. ‘The intraspecific diversity of tooth morphology in the large‐spotted catshark Scyliorhinus stellaris: insights into the ontogenetic cues driving sexual dimorphism’, Journal of Anatomy, 237(5), 960–978. https://doi.org/10.1111/joa.13257

Berio, F. et al.,, 2022. ‘Hide and seek shark teeth in Random Forests: machine learning applied to Scyliorhinus canicula populations’. PeerJ. https://doi.org/10.7717/peerj.13575

Capapé, C. et al., 2014. ‘Production, maturity, reproductive cycle and fecundity of small-spotted catshark, Scyliorhinus canicula (Chondrichthyes: Scyliorhinidae) from the northern coast of Tunisia (Central Mediterranean)’, Journal of ichthyology, 54(1), 111–126. https://doi.org/10.1134/S0032945214010020

Dittman, D. E. et al., 1998. ‘Growth patterns in oysters, Crassostrea virginica, from different estuaries’, Marine Biology, 132, pp. 461–469. https://doi.org/10.1007/s002270050412

Huret, M. et al., 2019. ‘Variation in life-history traits of European anchovy along a latitudinal gradient: a bioenergetics modelling approach’, Marine Ecology Progress Series, 617–618, 95–112. https://doi.org/10.3354/meps12574

Kousteni, V. et al., 2015. ‘Strong population genetic structure and contrasting demographic histories for the small-spotted catshark (Scyliorhinus canicula) in the Mediterranean Sea’, Heredity, 114(3), 333–343. https://doi.org/10.1038/hdy.2014.107

Kousteni, V. et al., 2017. ‘Diet of the small-spotted catshark Scyliorhinus canicula in the Aegean Sea (eastern Mediterranean)’, Marine Biology Research, 13(2), pp. 161–173. https://doi.org/10.1080/17451000.2016.1239019

Lombardi-Carlson, L. A. et al., 2003. ‘Latitudinal variation in life-history traits of bonnethead sharks, Sphyrna tiburo, (Carcharhiniformes : Sphyrnidae) from the eastern Gulf of Mexico’, Marine and Freshwater Research, 54(7), 875-883. https://doi.org/10.1071/MF03023

MacLeod, N., 2017. ‘On the use of machine learning in morphometric analysis’, in Biological shape analysis: proceedings of the 4th international symposium, 134–171. https://doi.org/10.1142/9789813225701_0008

Mitteroecker, P. and Bookstein, F., 2011. ‘Linear discrimination, ordination, and the visualization of selection gradients in modern morphometrics’, Evolutionary Biology, 38, 100–114. https://doi.org/10.1007/s11692-011-9109-8

Naylor, G. and Marcus, L., 1994. ‘Identifying isolated shark teeth of the genus Carcharhinus to species: relevance for tracking phyletic change through the fossil record’, American Museum Novitates, 3109, 1–53.

Soares, K. D. A. and de Carvalho, M. R., 2019. ‘The catshark genus Scyliorhinus (Chondrichthyes: Carcharhiniformes: Scyliorhinidae): taxonomy, morphology and distribution’, Zootaxa, 4601(1), 1–147. https://doi.org/10.1111/joa.13257

Soda, K. J. et al., 2017. ‘Artificial neural networks and geometric morphometric methods as a means for classification: A case-study using teeth from Carcharhinus sp. (Carcharhinidae)’, Journal of Morphology, 278(1), 131–141. https://doi.org/10.1002/jmor.20626

Wiley, D., 2006. ‘Landmark Editor 3.0’. Institute for Data Analysis and Visualization, University of California, Davis.

Cited by:

Fidji Berio, Yann Bayle, Daniel Baum, Nicolas Goudemand and Mélanie Debiais-Thibaud (2022). Hide and seek shark teeth in Random Forests: machine learning applied to Scyliorhinus canicula populations. PeerJ. https://doi.org/10.7717/peerj.13575

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Issue 2022-06Volume 08, issue 02<< prev. next >>ISSN: 2274-0422

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3D dataset

3D models related to the publication: Hide and seek shark teeth in Random Forests: Machine learning applied to Scyliorhinus canicula

Fidji Berio , Yann Bayle , Sylvie Agret, Daniel Baum , Nicolas Goudemand and Mélanie Debiais-Thibaud

Abstract

Specimens and 3D Data

M3#941

M3#942

M3#959

M3#958

M3#957

M3#940

M3#939

M3#938

M3#937

M3#936

M3#935

M3#934

M3#933

M3#943

M3#945

M3#944

M3#956

M3#955

M3#954

M3#953

M3#952

M3#951

M3#950

M3#949

M3#948

M3#947

M3#946

M3#932

M3#931

M3#917

M3#916

M3#915

M3#911

M3#914

M3#913

M3#912

M3#910

M3#908

M3#909

M3#907

M3#905

M3#906

M3#918

M3#930

M3#929

M3#928

M3#927

M3#926

M3#925

M3#924

M3#923

M3#922

M3#921

M3#920

M3#919

M3#904

References

Cited by:

Issue

2022-06
Volume 08, issue 02
<< prev. next >>
ISSN: 2274-0422