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2024-12
Volume 10, issue 04
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ISSN: 2274-0422

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Page 3 of 10, showing 20 record(s) out of 188 total

A 3D geometric morphometric dataset quantifying skeletal variation in birds
Alexander Bjarnason Logo and Roger Benson Logo
Published online: 09/02/2021

Keywords: birds; geometric morphometrics; macroevolution; Morphology; skeleton

https://doi.org/10.18563/journal.m3.125

  Abstract

    Macroevolution is integral to understanding the patterns of the diversification of life. As the life sciences increasingly use big data approaches, large multivariate datasets are required to test fundamental macroevolutionary hypotheses. In vertebrate evolution, large datasets have been created to quantify morphological variation, largely focusing on particular areas of the skeleton. We provide a landmarking protocol to quantify morphological variation in skeletal elements across the head, trunk, hindlimb and forelimb using 3-dimensional landmarks and semilandmarks, and present a large pan-skeletal database of bird morphology for 149 taxa across avian phylogeny using CT scan data. This large collection of 3D models and geometric morphometric data is open access and can be used in the future for new research, teaching and outreach. The 3D models and CT scans of the 149 specimens related to this project can be downloaded at MorphoSource (https://www.morphosource.org/projects/00000C420

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Published in Volume 07, issue 01 (2021)

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S.I. Data
Holotype specimen of Donrussellia magna, an adapiform primate from the early Eocene (MP7) of Southern France
Anusha Ramdarshan, Marc Godinot Logo, Samuel Bédécarrats Logo and Rodolphe Tabuce Logo
Published online: 18/06/2015

Keywords: Adapiformes; Early Eocene; Holotype; Primates; Southern France

https://doi.org/10.18563/m3.1.2.e2

  Abstract

    This project presents a µCT dataset and an associated 3D surface model of the holotype of Donrussellia magna (UM PAT 17; Primates, Adapiformes). UM PAT17 is the only known specimen for the species and consists of a well-preserved left lower jaw with p4-m3. It documents one of the oldest European primates, eventually dated near the Paleocene Eocene Thermal Maximum. 

  Specimens

    Donrussellia magna UM PAT 17 View specimen

    M3#17

    3D surface file model of UM PAT 17 (type specimen of Donrussellia magna), which is a well preserved left lower jaw with p4-m3. The teeth (and roots) were manually segmented.

    Type: "3D_surfaces"

    doi: 10.18563/m3.sf17   state:published




    Download 3D surface file

    M3#18

    CT Scan Data of Donrussellia magna UM PAT 17. Voxel size (in µm): 36µm (isotropic voxels). Dimensions in x,y,z : 594 pixels, 294 pixels, 1038 pixels. Image type : 8-bit voxels. Image format : raw data format (no header).

    Type: "3D_CT"

    doi: 10.18563/m3.sf18   state:published




    Download CT data


 
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Published in Vol. 01, Issue 02 (2015)

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Digital restoration of the snout of Khirtharia inflata (Raoellidae,  Artiodactyla) from the middle Eocene of northwest Himalaya
Maëva J. Orliac Logo, Mohd Waqas Logo, Rajendra Rana Logo and Thierry Smith Logo
Published online: 20/06/2024

Keywords: Cetacea; incisor; India; raoellid

https://doi.org/10.18563/journal.m3.224

  Abstract

    In this work, we digitally restore the snout of the raoellide Khirtharia inflata from the Kalakot area (Rajouri District, Jammu & Kashmir, India). Raoellids are small, semiaquatic ungulates closely related to cetaceans. The specimen is fairly complete and preserves left and right maxillaries, left premaxillary, and part of the anterior and jugal dentition. The digital restoration of this quite complete but deformed specimen of Khirtharia inflata is a welcome addition to the data available for raoellids and will be used to further the understanding of the origins of cetaceans.
      

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Published in Volume 10, issue 02 (2024)

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3D models related to the publication: Shape diversity in conodont elements, a quantitative study using 3D topography.
Alexandre Assemat Logo, Ghislain Thiery Logo, Thibaud Lieffroy Logo and Catherine Girard
Published online: 17/01/2024

Keywords: Conodonts; Doolkit; Morphofunction; Scanning resolution; Topography

https://doi.org/10.18563/journal.m3.223

  Abstract

    The present 3D Dataset contains the 3D models analyzed in Assemat et al. 2023: Shape diversity in conodont elements, a quantitative study using 3D topography. Marine Micropaleontology 184. https://doi.org/10.1016/j.marmicro.2023.102292

    P1 elements represent dental components of the conodont apparatus that perform the final stage of food processing before ingestion. Consequently, quantifying the shape of P1 elements across the topographic indices of different conodont species becomes crucial for deciphering the diversity in feeding behavior within this group. 

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Published in Volume 10, issue 01 (2024)

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A human head micro-CT dataset : skull and soft tissues
Guillaume Captier Logo, Valentin Favier Logo and Renaud Lebrun Logo
Published online: 10/05/2023

Keywords: Cranial osteology; Head; Homo sapiens; Micro-CT; Soft tissues

https://doi.org/10.18563/journal.m3.195

  Abstract

    The present Dataset contains the micro-CT scan of the head of an anonymous 54 year old female donor, at a voxel resolution of 145µm. The skin of the face has been masked in order to avoid the donor to be recognized.
      

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Published in Volume 09, issue 02 (2023)

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3D model related to the publication: An eosimiid primate of South Asian affinities in the Paleogene of Western Amazonia and the origin of New World monkeys
Laurent Marivaux Logo, Francisco R. Negri Logo and Ana M. Ribeiro Logo
Published online: 04/07/2023

Keywords: Brazilian Amazonia; early Anthropoidea; Eosimiidae; Paleobiogeography; Platyrrhini

https://doi.org/10.18563/journal.m3.188

  Abstract

    This contribution contains the three-dimensional digital model of one isolated fossil tooth of an anthropoid primate (Ashaninkacebus simpsoni), discovered in sedimentary deposits located on the upper Rio Juruá in State of Acre, Brazil (Western Amazonia). This fossil was described, figured and discussed in the following publication: Marivaux et al. (2023), An eosimiid primate of South Asian affinities in the Paleogene of Western Amazonia and the origin of New World monkeys. Proceedings of the National Academy of Sciences USA. https://doi.org/10.1073/pnas.2301338120  
      

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Published in Volume 09, issue 03 (2023)

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3D models related to the publication: Deciphering the morphological variation and its ontogenetic dynamics in the Late Devonian conodont Icriodus alternatus
Catherine Girard, Anne-Lise Charruault Logo, Thomas Gluck, Carlo Corradini Logo and Sabrina Renaud Logo
Published online: 08/02/2022

Keywords: Conodonts; geometric morphometrics; Late Devonian; ontogenetic trajectory

https://doi.org/10.18563/journal.m3.161

  Abstract

    This contribution contains the 3D models of a set of Famennian conodont elements belonging to the species Icriodus alternatus analyzed in the following publication: Girard et al. 2022: Deciphering the morphological variation and its ontogenetic dynamics in the Late Devonian conodont Icriodus alternatus

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Published in Volume 08, issue 01 (2022)

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3D models related to the publication: An assemblage of giant aquatic snakes (Serpentes, Palaeophiidae) from the Eocene of Togo
Georgios L. Georgalis Logo, Guillaume Guinot Logo, Koffi E. Kassegne, Yawovi Z. Amoudji Logo, Ampah K. Johnson, Henri Cappetta Logo and Lionel Hautier Logo
Published online: 24/09/2021

Keywords: Africa; Eocene; Palaeophis; Serpentes; vertebral anatomy

https://doi.org/10.18563/journal.m3.154

  Abstract

    This contribution contains the 3D models described and figured in the following publication: Georgalis, G.L., G. Guinot, K.E. Kassegne, Y.Z. Amoudji, A.K.C. Johnson, H. Cappetta and L. Hautier. 2021. An assemblage of giant aquatic snakes (Serpentes, Palaeophiidae) from the Eocene of Togo. Swiss Journal of Palaeontology 140, https://doi.org/10.1186/s13358-021-00236-w 

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Published in Volume 07, issue 03 (2021)

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3D models related to the publication: Wild versus lab house mice: Effects of age, diet, and genetics on molar geometry and topography.
Sabrina Renaud Logo, Caroline Romestaing Logo and Yoland Savriama Logo
Published online: 06/08/2021

Keywords: dental functional morphology; geometric morphometrics; hybridization; mastication; occlusal relief

https://doi.org/10.18563/journal.m3.141

  Abstract

    This contribution contains 3D models of upper molar rows of house mice (Mus musculus domesticus). The erupted part of the right row is presented for specimens belonging to four groups: wild-trapped mice, wild-derived lab offspring, a typical laboratory strain (Swiss) and hybrids between wild-derived and Swiss mice. These models are analyzed in the following publication: Savriama et al 2021: Wild versus lab house mice: Effects of age, diet, and genetics on molar geometry and topography. https://doi.org/10.1111/joa.13529 

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Published in Volume 07, issue 03 (2021)

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3D model related to the publication: Cranial morphology and phylogenetic relationships of Amynodontidae Scott & Osborn, 1883 (Perissodactyla, Rhinocerotoidea)
Léa Veine-Tonizzo Logo, Jérémy Tissier Logo, Maia Bukhsianidze, Davit Vasilyan Logo and Damien Becker Logo
Published online: 20/03/2023

Keywords: Amynodontidae; Eocene; Oligocene; phylogeny; Rhinocerotoidea

https://doi.org/10.18563/journal.m3.139

  Abstract

    The present 3D Dataset contains the 3D model of a specimen of Metamynodon planifrons (UNISTRA.2015.0.1106) described and figured in: Veine-Tonizzo, L., Tissier, J., Bukhsianidze, M., Vasilyan, D., Becker, D., 2023, Cranial morphology and phylogenetic relationships of Amynodontidae Scott & Osborn, 1883 (Perissodactyla, Rhinocerotoidea). 

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Published in Volume 09, issue 01 (2023)

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3D models related to the publication: The endocranial cast of Indohyus (Artiodactyla, Raoellidae): the origin of the cetacean brain
 
Maëva J. Orliac Logo and J. G. M. Thewissen Logo
Published online: 27/04/2021

Keywords: brain; Cetacea; CT scan; endocast; Eocene

https://doi.org/10.18563/journal.m3.137

  Abstract

    The present 3D Dataset contains the 3D models of the endocranial cast of two specimens of Indohyus indirae described in the article entitled “The endocranial cast of Indohyus (Artiodactyla, Raoellidae): the origin of the cetacean brain” (Orliac and Thewissen, 2021). They represent the cast of the main cavity of the braincase as well as associated intraosseous sinuses.
      

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Published in Volume 07, issue 02 (2021)

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A delphinid petrosal bone from a gravesite on Ahu Tahai, Easter Island: taxonomic attribution, external and internal morphology.
Maëva J. Orliac Logo, Catherine Orliac, Michel C. Orliac and Antoine Hautin
Published online: 31/03/2020

Keywords: bony labyrinth; petrosal; Rapanui; stapes; vestibulo cochlear nerve

https://doi.org/10.18563/journal.m3.91

  Abstract

    In this contribution, we describe the external and internal morphology of a delphinid petrosal bone collected from Ahu Tahai, a burial site located on the Southwestern coast of Easter Island, at Hangaroa. We discuss the taxonomic attribution of this archaeological item and describe its internal structures based on µCT data, including the bony labyrinth and the nerve and vein patterns. Identification of the nerves exists lead us to relocate the identification of the foramen singulare in delphinid petrosals.

      

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Published in Volume 06, issue 02 (2020)

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MicroCT survey of larval skeletal mineralization in the Cuban gar Atractosteus tristoechus (Actinopterygii; Lepisosteiformes)
Raphaël Scherrer Logo, Andrés Hurtado, Erik Garcia Machado Logo and Mélanie Debiais-Thibaud Logo
Published online: 17/05/2017

Keywords: Actinopterygii; development; Lepisosteiformes; mineralization; skeleton

https://doi.org/10.18563/m3.3.3.e3

  Abstract

    Using X-ray microtomography, we describe the ossification events during the larval development of a non-teleost actinopterygian species: the Cuban gar Atractosteus tristoechus from the order Lepisosteiformes. We provide a detailed developmental series for each anatomical structure, covering a large sequence of mineralization events going from an early stage (13 days post-hatching, 21mm total length) to an almost fully ossified larval stage (118dph or 87mm in standard length). With this work, we expect to bring new developmental data to be used in further comparative studies with other lineages of bony vertebrates. We also hope that the on-line publication of these twelve successive 3D reconstructions, fully labelled and flagged, will be an educational tool for all students in comparative anatomy. 

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  M3 article infos

Published in Volume 03, Issue 03 (2017)

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3D models related to the publication: Comparative anatomy of the vocal apparatus in bats and implication for the diversity of laryngeal echolocation.
Nicolas L. M. Brualla Logo, Laura A. B. Wilson Logo, Vuong T. Tu Logo, Richard . Carter Logo and Daisuke Koyabu Logo
Published online: 28/06/2024

Keywords: Chiroptera; larynx; mammalian nasopharyngeal morphology; vocal tract; x-ray microtomography

https://doi.org/10.18563/journal.m3.219

  Abstract

    The present 3D Dataset contains the 3D models analyzed in Brualla et al., 2024: Comparative anatomy of the vocal apparatus in bats and implication for the diversity of laryngeal echolocation. Zoological Journal of the Linnean Society, vol. zlad180. (https://doi.org/10.1093/zoolinnean/zlad180). Bat larynges are understudied in the previous anatomical studies. The description and comparison of the different morphological traits might provide important proxies to investigate the evolutionary origin of laryngeal echolocation in bats. 

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Published in Volume 10, issue 02 (2024)

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3D models related to the publication: Comparative anatomy and phylogenetic contribution of intracranial osseous canals and cavities in armadillos and glyptodonts (Xenarthra, Cingulata)
Kévin Le Verger Logo, Laureano Gonzalez Ruiz and Guillaume Billet Logo
Published online: 07/04/2023

Keywords: alveolar cavities; canals; cingulata; cranial anatomy; evolutionary scenarios.

https://doi.org/10.18563/journal.m3.157

  Abstract

    The present 3D Dataset contains the 3D models analyzed in the following publication: Le Verger K., González Ruiz L.R., Billet G. 2021. Comparative anatomy and phylogenetic contribution of intracranial osseous canals and cavities in armadillos and glyptodonts (Xenarthra, Cingulata). Journal of Anatomy 00: 1-30 p. https://doi.org/10.1111/joa.13512 

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Published in Volume 09, issue 02 (2023)

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3D models related to the publication: The neuroanatomy of Zulmasuchus querejazus (Crocodylomorpha, Sebecidae) and its implications for the paleoecology of sebecosuchians
Yohan Pochat-Cottilloux Logo, Jeremy E. Martin Logo, Stéphane Jouve Logo, Gwendal Perrichon Logo, Jérôme Adrien Logo, Céline Salaviale, Christian de Muizon Logo, Ricardo Cespedes and Romain Amiot Logo
Published online: 26/11/2021

Keywords: Bolivia; Crocodylomorpha; paleoneuroanatomy; Sebecidae; Zulmasuchus

https://doi.org/10.18563/journal.m3.148

  Abstract

    The present 3D Dataset contains the 3D models analyzed in Pochat-Cottilloux Y., Martin J.E., Jouve S., Perrichon G., Adrien J., Salaviale C., de Muizon C., Cespedes R. & Amiot R. (2021). The neuroanatomy of Zulmasuchus querejazus (Crocodylomorpha, Sebecidae) and its implications for the paleoecology of sebecosuchians. The Anatomical Record, https://doi.org/10.1002/ar.24826 

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Published in Volume 07, issue 04 (2021)

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3D model related to the publication: Presence of the ground sloth Valgipes bucklandi (Xenarthra, Folivora, Scelidotheriinae) in southern Uruguay during the Late Pleistocene: Ecological and biogeographical implications
Luciano Varela Logo, Carolina Lobato and Pablo S. Tambusso Logo
Published online: 24/06/2021

Keywords: Ground sloth; Mylodontidae; Quaternary; Scelidotheriinae; South America

https://doi.org/10.18563/journal.m3.147

  Abstract

    The present 3D Dataset contains the 3D model analyzed in Presence of the ground sloth Valgipes bucklandi (Xenarthra, Folivora, Scelidotheriinae) in southern Uruguay during the Late Pleistocene: Ecological and biogeographical implications. Quaternary International. https://doi.org/10.1016/j.quaint.2021.06.011 

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Published in Volume 07, issue 02 (2021)

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3D model related to the publication: New turtles from the Late Cretaceous of Monte Alto-SP, Brazil, including cranial osteology, neuroanatomy and phylogenetic position of a new taxon.
Gabriel S. Ferreira Logo, Fabiano V. Iori Logo, Guilherme Hermanson Logo and Max C. Langer Logo
Published online: 01/02/2018

Keywords: carotid circulation; microcomputed tomography; neuroanatomy; Pleurodira; Podocnemidoidae

https://doi.org/10.18563/m3.3.2.e2

  Abstract

    This contribution contains the 3D model described and figured in the following publication: New turtles from the Late Cretaceous of Monte Alto-SP, Brazil, including cranial osteology, neuroanatomy and phylogenetic position of a new taxon. PalZ. https://doi.org/10.1007/s12542-017-0397-x 

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Published in Volume 03, Issue 02 (2017)

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S.I. Data
3D models related to the publication: Morphogenesis of the liver during the human embryonic period
Ayumi Hirose Logo, Takashi Nakashima, Naoto Shiraki, Shigehito Yamada Logo, Chigako Uwabe, Katsumi Kose Logo and Tetsuya Takakuwa Logo
Published online: 17/03/2016

Keywords: human embryo; human liver; magnetic resonance imaging; three-dimensional reconstruction

https://doi.org/10.18563/m3.1.4.e1

  Abstract

    The present 3D Dataset contains the 3D models analyzed in: Hirose, A., Nakashima, T., Yamada, S., Uwabe, C., Kose, K., Takakuwa, T. 2012. Embryonic liver morphology and morphometry by magnetic resonance microscopic imaging.  Anat Rec (Hoboken) 295, 51-59. doi: 10.1002/ar.21496 

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Published in Volume 01, Issue 04 (2016)

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Skeletogenesis during the late embryonic development of the catshark Scyliorhinus canicula (Chondrichthyes; Neoselachii)
Sébastien Enault, Sylvain Adnet Logo and Mélanie Debiais-Thibaud Logo
Published online: 25/04/2016

Keywords: Chondrichthyes; development; mineralization; Scyliorhinus canicula; skeleton

https://doi.org/10.18563/m3.1.4.e2

  Abstract

    Current knowledge on the skeletogenesis of Chondrichthyes is scarce compared with their extant sister group, the bony fishes. Most of the previously described developmental tables in Chondrichthyes have focused on embryonic external morphology only. Due to its small body size and relative simplicity to raise eggs in laboratory conditions, the small-spotted catshark Scyliorhinus canicula has emerged as a reference species to describe developmental mechanisms in the Chondrichthyes lineage. Here we investigate the dynamic of mineralization in a set of six embryonic specimens using X-ray microtomography and describe the developing units of both the dermal skeleton (teeth and dermal scales) and endoskeleton (vertebral axis). This preliminary data on skeletogenesis in the catshark sets the first bases to a more complete investigation of the skeletal developmental in Chondrichthyes. It should provide comparison points with data known in osteichthyans and could thus be used in the broader context of gnathostome skeletal evolution. 

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  M3 article infos

Published in Volume 01, Issue 04 (2016)

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Page 3 of 10, showing 20 record(s) out of 188 total